Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2902132 chr5:156445525 C/T 1.42E-7 288 12.78 25.18 26.28 KM Plot
KIRP rs2902133 chr5:156445687 G/A 2.69E-5 286 16.23 22.47 26.37 KM Plot
KIRP rs2921024 chr8:8349087 C/T 1.01E-6 279 6.1 21.65 26.7 KM Plot
KIRP rs2925339 chr15:42091212 C/T 4.41E-5 289 29.2 21.93 16.55 KM Plot
KIRP rs2976898 chr8:8340358 A/G 3.37E-6 285 27.75 21.63 8.4 KM Plot
KIRP rs2979189 chr8:8336628 C/T 5.24E-6 287 28.03 21.12 8.4 KM Plot
KIRP rs2979196 chr8:8340476 A/T 3.4E-6 284 27.75 21.12 8.4 KM Plot
KIRP rs2979201 chr8:8343716 G/A 2.22E-6 284 27.47 20.6 8.4 KM Plot
KIRP rs2980737 chr8:8340028 T/A 3.37E-6 285 27.75 21.63 8.4 KM Plot
KIRP rs2980747 chr8:8347822 A/G 1.43E-6 289 27.47 21.12 8.4 KM Plot
KIRP rs2997538 chr9:78941229 G/A 5.65E-5 288 25.58 29.67 7.27 KM Plot
KIRP rs3001773 chr9:78941012 C/T 5.65E-5 288 25.58 29.67 7.27 KM Plot
KIRP rs3008253 chr8:227689 T/C 3.04E-5 286 26.37 21.97 14.98 KM Plot
KIRP rs3008309 chr10:135068724 A/G 0.000143 289 25.62 25.7 21.38 KM Plot
KIRP rs3012361 chr6:170448999 C/T 1.08E-5 289 24.8 29.2 12.93 KM Plot